Difference between revisions of "Common Functionality"

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== Login to VRE ==
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==Workspace==
Once you have signed in to the portal, you can see the User interface where you can select a VRE to work on. In the drop down list on the right of the page you can choose any of the available VREs and load it.  
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A workspace represents a collaborative area in which users can exchange and organize information objects (items) according to their specific needs. Because of this, every user of any Virtual Research Environment is provided with this area. Such an area is further organized in workspaces and baskets  as to resemble a classic folder-based file system. The information objects that can be managed via the workspace range from files to D4Science documents, i.e. compound objects comprising metadata, alternative representations and multiple parts. The modality a workspace is populated range from the dragging of D4Science documents (or part of them) to the upload of files from its desktop and the exchange of workspace objects among users.  
In the following figure you can see the interface. After the login select the preferred VRE to load and click "enter"<br>[[Image:SelectVRE.png]]<br>
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== Search ==
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[[Workspace | Click here for more information]]
  
Search is the most important functionality in the gCube system.
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== Login to VO/VRE ==
You can perform different kind of searches, depending on the results you want to have and how generic or specific your search wants to be. The different kinds are: ''Combined Search'', ''Simple Search'', ''Quick Search'', ''Google Search'', ''Collection browsing'', ''Generic Search'' and ''Search in previous results''. Each one of them will be described below. <br>
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In order to perform a ''Combined Search'', a ''Simple Search'', or a ''Collections Browsing'', you first have to select collections. For this purpose you have to use the ''Select Collections'' portlet.<br>
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Independently of the search type all results are displayed by the Results portlet.
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=== Select Collections ===
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See [[Log in User Guide]].
By using this portlet, you can select the desired collections in order to browse or search them.<br>
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The collections are presented in a tree hierarchy. The first level of nodes represents a collection group and each group contains several collections. In the following image, f.i. '''''Time Series Graphs''''' is a collection group. On the left of each checkbox, there is either a cross or a dash icon. If there is a ''cross'' icon, it means that there are other collections inside this group of collections. By click on it, you can see the underlying collections. On the other hand, if there is ''dash'' icon, it means that the node is  expaned and you already see the inner collections (like '''''Maps'''''). So, if you click on it, you can hide them.<br>
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In order to select/deselect a collection, you have to click on its name or checkbox. Additionally, you can select a group of collections simply by selecting the group of collections they belong to. As you can see below, if you select the '''''Maps''''' collection group, then all the collections that belong to this group are selected.<br>
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[[Image:CollectionsPortlet.png]]<br><br>
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A full description for each collection is available, if you click on ''(more)'' link. A pop up window appears containing a description of the corresponding collection as you can see bellow. Under the name of each collection you can also see a part or the full description for each collection.<br>
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[[Image:CollsDesc.png]]<br><br>
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For your flexibility you can search through the available collections for a keyword that may be included in collections name and/or description. The following image displays this functionality.
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[[Image:SearchColls.png]]<br><br>
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The collections that you have already selected, are also selected at the pop-up window with the search results. You can deselect the already selected collections or select new collections. By clicking on the results at the pop-up window this change will also be applied at the collections tree.<br><br>
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=== Combined Search ===
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== Search ==
  
In Combined Search you have to select the collections you want to search in at the left panel, by performing some of the actions described above. Then in the right panel you select the Combined Search header and you can type as many keywords as you like.
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See [[Search User Guide]].
You can select the fields where each one of the keywords should exist in. Depending on the common schema of the selected collections and the indexes that the back-end supports there are choices like title, language, creator, description and 'Terms' (which means that you want to search for this keyword everywhere inside the selected collections).
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 +
== Annotations ==
  
[[Image:SearchAndCollectionPortlet.png]]
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Annotations’ management is performed by the Annotation Portlet. This is a graphical user interface which provides an easy and sufficient way to annotate gCube information objects. Annotation Portlet can be invoked by selecting the “Manage Annotations” action among the actions associated with any item displayed in the Results portlet.
  
Different metadata schemata may be available for the selected collections. You can change the metadata schema, and the language if the same metadata schema is available in different languages. This choice affects the fields you can search through and the ones you can specify for sorting the results.
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Then the user is moved to the annotation portlet where s/he is able to see the title, the mimetype, the content of the selected object as well as its  annotations sorted by their creation date and grouped into threads.
  
[[Image:SelectSchema.png]]
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Depending on the mimetype of the annotated object, the visualization of its content may differ.  
  
You can add a new condition by pressing the '''Add Condition''' button.
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In most cases, the content is displayed in a specified part of the portlet.
If you have more than one condition, you can select whether you want to search for results matching all conditions or for results matching any condition. You can do this by selecting one of the below radio buttons. The default choice is: ''match any condition''. You can also specify by which field you want the results to be sorted and by which order. If you don't specify anything the results are not sorted by any field.
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 +
For a zip file, its entries are displayed and the user is able to download any of them.
  
[[Image:2condsSort.png]]
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Tiff images are transformed into a displayable format (png); video files are available only for download and the visualization of pdf files depends on the behavior of the browser (normally a plug-in is required).
  
You can delete any of the conditions by pressing the '''"X"''' button or you can clean the whole form by pressing the '''Reset''' button. Notice here that if there is only one condition and try to delete it a warning message will appear and the condition will not be deleted.
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On the other hand, the annotations are grouped into threads, shown up as a list where the title of each thread is the title of the first contained annotation.
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The user can enter each thread and the annotations of this thread are displayed as a list where the title, their creation/ modification date and the author’s  name are posted up.
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The user is able to select which annotations (comments or associations) s/he wants to see just by clicking on it. The content of the annotations is shown at a pop up window where you can edit it. In the case of associations, the title of the associated object as well as a link to its content is displayed.
  
=== Simple Search ===
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The user can either enter a selected Thread or create a new Thread by clicking on the corresponding buttons. By creating a new Thread a new annotation is actually created.
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After entering a Thread the uses can add an annotation by clicking on the “Add” button and afterwards by filling in the title and text field, in the case of text annotations, or by filling in the title field and selecting an object existing in the basket as an associated object in the case of associations. S/he may also delete or edit an annotation.
  
In Simple search you can search for the keywords you type at the text area, in the collections you have selected on the left panel.
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All the changes made by the user are persisted when s/he presses the "Save Changes" button.
When you use the simple search, a full text search is performed, which means that the keywords you have typed are being searched inside all fields of the selected collections.
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You can also change the metadata schema that will be used for this search by choosing on of the available schemata from the drop down list. <br>
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[[Image:SimpleSearch.png]]
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<!--If anchored annotations are supported for the annotated object the user can choose to be moved to the appropriate portlet by clicking on the “Go to anchored mode” button. Three portlets for anchored annotations are provided, namely, cover images, text and video documents.-->
 
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Please notice here, that there could be a case that you won't be able to perform a simple search if you select a schema that does not support full text search. In that case a message will appear informing you about this case.
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[[Image:SimpleSearchNotAvInfoMsg.png]]
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=== Collection Browsing ===
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In Collection Browsing search you have two options. You can browse all the contents of the collection you have selected on the left panel or you can perform a distinct browse on the selected field. You can choose by which element the results will be sorted and by which order.
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The browsing can be used only if you have selected one collection. You cannot browse multiple selected collections at the same time.
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[[Image:BrowseCollection.png]]
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You can click on the information button so that you will be informed about the result of each different type of browse.
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=== Search in Previous Results ===
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Using this portlet you can refine your search results of the last queries you had performed using either the combined or the simple search.
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First you should select which of the last results you want to refine, then you can type the keywords you want to search for and click the search button.
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Notice here that the refinement of a previous query is not affected by the current selected collections. The keywords you search for are applied to the results you want to refine.
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[[Image:PreviousSearch.png]]
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By clicking on the '''?''' button you can see the query you want to refine written on the gCube's query language.
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[[Image:PreviousSearchQuery.png]]
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After the selection of the query you have two options: you can either browse the results of this query by clicking on the '''Browse''' button, or you can refine these results by adding new conditions and clicking the '''Search''' button.
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=== Quick and Google Search ===
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Using Quick Search you can perform a generic search in the gCube system. No selection of collections is required in order to search using this feature. The system automatically identifies the most appropriate collections to search, taking into account the terms specified by the user.
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You can also perform a Google search, whose results are displayed in the Results portlet. Due to google's restrictions the system returns at most 10 results
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[[Image:QuickAndGoogleSearch.png]]
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=== Generic Search ===
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Generic Search allows you to type a query in the gCube query language.
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In order to submit a valid query, you must be well aware of both the syntax of the query and the current status of the infrastructure. You must know the IDs of the content and also the existence or not of several types of indexes.
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For this reason you are provided with all these information.
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After you submit the query you should go to the results page in order to browse the results.
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----
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[[Image:GenericSearch.png]]
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Information about the syntax of the query language can be found [https://technical.wiki.d4science.research-infrastructures.eu/documentation/index.php/Search_Framework#Syntax here]
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----
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=== Geospatial Search ===
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'''For geospatial indexed collections it is possible to use the map located in the center of the page to specify a geographical area to search in.'''
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The Pan Tool situated above the map is the default tool selected to allow the user to drag the map, and to zoom in by double clicking on it.
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There are different ways to define the area; a user can define the area:
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by selecting the Country / Zone from the '''dropdown list''' placed on the top of the map. The list contains many countries all across the world as well as continents and relevant world zones.
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[[Image:GeoSpatialSelectCountry.jpg|frame|none|Example of selecting an item from the list]]
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by clicking on the '''rectangular selection tool''' (in orange on the figure below), thus activating the rectangular selection tool.
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Once the button is pressed, first click on the map to set the starting point, then move the mouse on the map, second click to close the select operation. The tool will automatically zoom the selected area.
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[[Image:RectangularTool.jpg|frame|none|Example of Rectangular Selection tool]]
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by clicking on the''' polygonal selection tool''' (in orange on the figure below), thus activating the polygonal selection tool.
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Once the button is pressed, first click on the map to set the starting point, then move the mouse on the map, each click after the first will specify the next vertex to add at the polygon. Double click to close the select operation. The tool will automatically zoom the selected area.
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[[Image:PolygonalTool.jpg|frame|none|Example of Polygonal Selection tool]]
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Below the map there are some optional parameters you can also add for enriching your query.
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On the left there is the Query Area Selection specifier which has three possible values: inside, intersect, contains. For further information about these three values you can hold the mouse pointer over them.
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[[Image:BelowMap.jpg|frame|none|]]
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In the middle of the image above you can find the geo-coordinates of the selected area which are automatically updated depending on the user selection.
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On the bottom right spot of this portlet you can find the calendar tool which allows the user to specify a date interval for the retrieved documents. Clicking on the calendar icon will cause the date picker opening.
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[[Image:Calendar1.jpg|frame|none|Date Picker example]] [[Image:Calendar2.jpg|frame|none|]]
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== Result Browsing ==
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[[Image:Alert_icon2.gif]] ''THIS SECTION OF GCUBE DOCUMENTATION IS CURRENTLY UNDER UPDATE.''
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This portlets aims to provide with common navigational functionality through the results. In addition a set of action can be performed on each result record, like accessing metadata, add annotations, saving or viewing the content, etc.
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=== Common Browsing Activities ===
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You can navigate throughout the results by using the links: ''first'', ''previous'' and ''next''. These links correspondingly get the first, previous or next 10 results.<br>
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For each result, you can see a set of information, retrieved from object's metadata. The record's presentaiotn form is user configurable. You can select the prefered layout for results, by using the ''User Profile Editing'' portlet. Additionally, a thumbnail (small representation of the content) appears at the right part of each result record.<br>
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Moreover, you can perform a set actions on each result:
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#''View Content'': It opens a popup window that contains, and displays the content.
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#''Save Content'': Forces browser to ask to save the content in you local disk.
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#''Manage Annotations'': You can add /remove / edit annotations for this object.
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#''View Metadata'': You can view record's metadata.
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#''Edit Metadata'': You can edit record's metadata.
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[[ Image:D4Science_res_manage.jpg|frame|none ]]
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=== The Basket ===
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'''The Basket is thought of as a personal user area, dependent on which DL s/he is being using''' .
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The user can save its own preferred results by dragging them on it.
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[[Image:Basket_d4science_1.jpg|frame|none|Example of dragging record in the Basket]]
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It is even possible to drag images in the basket (if they are retrieved results).
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Indeed in the results page it is possible to drag whether records or images.
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[[Image:D4science_drag_image.jpg|frame|none|Example of dragging an image in the Basket]]
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Once you have chosen your results you have the possibility to '''make them persistent''' by giving the basket a name and saving it on the server. The possibility is also thought of using saved results in the report generation and courses management.
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[[Image:D4science_save_basket.jpg|frame|none|Example of saving a Basket]]
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You can always '''load your saved basket''' using the dropdown list placed on the top of the Basket.
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[[Image:LoadBasket.jpg|frame|none|Load Basket example]]
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By accessing the File menu besides the dropdown list it is possible to '''save the basket, to clean it or delete it'''.
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Be aware that the delete command will phisically remove your saved basket from the server without any possibility to have it back.
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[[Image:BasketMenuFile.jpg|frame|none|Load Basket example]]
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Once you have your chosen items in the basket it is possible to access to all the actions you had in the results record page such as accessing metadata, add annotations, save or view the content. If the item is an image you can access to a small preview of it.
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[[Image:7_All_Collection_Search_-_ViewContent.jpg|frame|none|Record actions from basket]]
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[[Image:4 GeoSpatial Results inBasket with Preview.jpg|frame|none|Image Preview from basket]]
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== Annotations ==
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Annotations’ management is performed by the Annotation Portlet. This is a graphical user interface which provides an easy and sufficient way to annotate gCube informtion objects. Annotation Portlet can be invoked by selecting the “Add annotation” action among the actions associated with any item displayed in the  Results portlet.
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Then the user is moved to the generic annotation portlet where s/he is able to see the title, the mimetype, the content of the selected object as well as its generic annotations sorted by their creation date.
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Depending on the mimetype of the annotated object, the visualization of its content may differ.
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In most cases, the content is displayed in a specified part of the portlet.
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For a zip file, its entries are displayed and the user is able to download any of them.
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Tiff images are transformed into a displayable format (png); video files are available only for download and the visualization of pdf files depends on the behaviour of the browser (normally a plug-in is required).
 
  
On the other hand, the annotations are shown up as a list where their title, their creation/ modification date and the author’s  name are posted up. The user is able to select which annotations (comments or associations) s/he wants to see just by clicking on the available checkboxes. The content of the annotations is shown below this list. In the case of associations, the title of the associated object as well as a link to its content is displayed.
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[[Image:AnnotViewThreads.png|frame|none|Annotation Portlet]]
  
The user may perform three operations. He can add an annotation by clicking on the “Add Annotation” button and afterwards by filling in the title and text field, in the case of text annotations, or by filling in the title field and selecting an object existing in the basket as an associated object in the case of associations. S/he may also delete or edit an annotation.
 
  
If anchored annotations are supported for the annotated object the user can choose to be moved to the appropriate portlet by clicking on the “Go to anchored mode” button. Three portlets for anchored annotations are provided, namely, cover images, text and video files.
 
  
  
[[Image:D4science_generic_annotation.jpg|frame|none|Generic Annotation Portlet]]
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When the object that is annotated is an image the user is able to add an annotation to a specific part of the image file. The user selects a space fragment and then he fills in the title and text fields. Then the space fragments are shown on the image and by clicking on one of them the content of the annotation is displayed.
  
  
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[[Image:AnnotCreateNew.png|frame|none|New annotation with fragment]]
  
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The user can edit an annotation be selecting the annotation s/he wants to edit and click on the "Edit" button. A pop up window appears with the content of the annotation
  
In image annotation portlet a user is able to add an annotation to a specific part of the image file. The user selects a space fragment which can be a rectangular area or a specific point (with a pin) and then he fills in the title and text fields. Then the space fragments are shown on the image and by clicking on one of them the content of the annotation is displayed.
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[[Image:AnnotEdit.png|frame|none|New annotation with fragment]]
  
  
[[Image:D4science_annotation.jpg|frame|none|Image Annotation Portlet]]
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<!-- In text annotation portlet there is the capability of adding an annotation on a selected text fragment of the textual document (e.g. plain text, xml documents). The selection of the text fragment is done in a very user friendly way as the user has only to choose the part of the text document with his mouse. The text fragments are shown with a different background in order to be distinguishable and by clicking on one of them the content of the annotation is displayed.
  
  
In text annotation portlet there is the capability of adding an annotation on a selected text fragment of the file. The selection of the text fragment is done in a very user friendly way as the user has only to choose the part of the text file with his mouse. The text fragments are shown with a different background in order to be distinguishable and by clicking on one of them the content of the annotation is displayed.
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In video annotation portlet (still under construction) a user will be able to select a time fragment which means a part of the video file that is defined by its starting and ending moment. Video annotation portlet has although some requirements as it needs Java Media Framework installed on the user’s computer. -->
  
  
In video annotation portlet (still under construction) a user will be able to select a time fragment which means a part of the video file that is defined by its starting and ending moment. Video annotation portlet has although some requirements as it needs Java Media Framework installed on the user’s computer.
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== Content Viewer ==
  
== Metadata Management ==
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The content viewer portlet provides the functionality to view a gCube object and all its properties and transform it, if any transformation is available for the object's mime type.
View and Edit metadata are the two functionalities that gCube offers to its users concerning the Metadata Management. These are described below.
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=== Metadata Viewing ===
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Using this portlet you can:
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* View the content of the selected object
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* View the available metadata of the object
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* View the aternative representations
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* Transform the main object using any of the available transformation programs (if any) and save the result of the transformation as a new object
  
The Metadata Viewing Portlet is a graphical user interface that displays the metadata which are associated with a specific information object. This interface displays the object’s metadata in a graphical way which depends on their schema.
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In order to use this portlet you should select from the results menu the '''Explore Object''' option for the object you would like to explore. After selecting this option you will be redirected to the Content Viewer portlet.<br>
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The main object is displayed as you can see at the image below<br>
  
Furthermore the portlet provides each user with the ability to change the way the metadata are displayed. If a user wants to manage the layout of the metadata viewing portlet, s/he may choose one layout of the available. This selection can be done in the user profile editing portlet.
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[[File:CVMain.png]]
  
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When you click on the '''Display''' button the pop-up window with the all the available properties for this object is displayed. You can select any of the available properties to view.
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For example you can see at the image below the metadata at the FARM_dc schema for this object.<br>
  
[[Image:D4science_metadata.jpg|frame|none|Metadata Viewing Portlet]]
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[[File:CMDisMetadata.png]]
  
=== Metadata Editing ===
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To view any of the alternative objects that are related to this object click on them<br>
  
Metadata’s editing is performed by Metadata Editing Portlet. This is a graphical user interface which can be invoked by selecting to edit the metadata of an object in Results portlet. Depending on the schema of the metadata different editors can be displayed. There are two visual editors for dc and eiDB schemas and a generic one for the rest. However, for some collections, it is forbidden to change the metadata, something that is stated on screen with a relevant message.
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[[File:CVDisAlt.png]]
  
The visual metadata editors provide an easy and user friendly way of editing the metadata. Adding, deleting and editing elements can be performed by clicking on the appropriate buttons and filling in text fields. When the desired changes are completed, the user has to apply the changes he has done by clicking on the “Save Changes” button.
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=== Transforming the selected object ===
  
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Depending on the available transformations programs you can transform the object to a new object and save it.
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In the example below the main object can be transformed to a new image with given height and width. <br>
  
[[Image:D4science_metadata_editing.jpg|frame|none|Visual Editor]]
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[[File:CVTransformMain.png]]
  
  
The generic editor provides two options. The first one is to edit the bare xml in a text editor and the second one is to upload an xml file as metadata. However, these options require the user to have sufficient knowledge of XML.
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=== Search Profile Settings ===
  
== User Profile Management ==
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The Search Profile portlet can be accessed by all users that have a portal account. Each user has his/her own search profile and he/she can view and/or edit its content through this portlet.
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By editing the search profile's contents you have several options that affect the search results or the presentation of the results and their metadata.
  
The User Profile Management in gCube provides the functionality to the end-user to view and/or edit his/her profile. It also provides the functionality to the system's administrator to manage the users' profiles.
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<!-- * <b>Personalize the search results:</b>
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** Change the language using the drop-down list. The language in the profile affects the results that will be retrieved. The results will be only contain content in the preferred language.
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** <b>EngineType:</b> InternalEngine
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EngineType element specifies the desired type of the engine that will be
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employed for executing plans produced by the search engine. The value
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type of this element is string. Currently these types are supported:
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  InternalEngine: Search internal execution engine
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  ActiveBPEL: ActiveBPEL engine
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  OSIRIS: OSIRIS execution engine
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* <b>Persistence:</b> false
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Persistence refers to the ability of the execution engine to
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persist its runtime state, in order to perform execution reincarnation,
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multiple executions, execution logging and analysis, etc.
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The value type of this element is boolean (true or false).
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* <b>FaultTolerance: </b>false
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FaultTolerance refers to
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the ability of the execution engine to recover from errors. The value
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type of this element is boolean (true or false).
 +
<br>
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-->
  
=== User Profile Editing ===
 
  
The User Profile Editing portlet can be accessed by all users that have a portal account. Each user has his/her own profile and he/she can view and/or edit its content through this portlet.
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* <b>Personalize the presentation of the results and their metadata:</b>
By editing the profile's contents you can change the language you prefer to search with within the selected collections in the Search portlet. Furthermore, you can select the preferred presentation and metadata xslts, in order to view the results and the metadata the way you like. If you don't change the xslts then the default ones are used by the results and metadata portlet.
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** For each available collection you can select any of the available presentable fields that will be used for the presentation of the results from the results portlet when this collection is used in search. If you don't select any field then all the available presentable fields will be displayed.
You can also specify some values that will be used while searching and have to do with: persistence of the results, the fault tolerance and the engine that will be used by the search service.
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** For each available metadata schema you can select one of the available xslts that will be used for the presentation of the metadata. If you don't change anything the default XSLT will be used.
In order to apply the changes the user has to press the '''Save profile''' button.
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** A preview is displayed for the current selected schema and XSLT. This helps you to select the desired XSLT.
  
[[Image:UserProfilePortlet.png]]
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In order to apply the changes you need to click on the '''Save profile''' button. A message is displayed to inform you if the profile was successfully updated.
  
=== Profile Administration ===
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== Report Management ==
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See [[Report Management]] page.
  
The Profile Administration portlet can be accessed only by users with privileged accounts. Using this portlet, you can create and/or delete a user profile by typing the user's username.
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== Time Series ==
You can also upload the Default User Profile on the Information System as a generic resource. This can be done through this portlet. The Default User Profile should be a valid XML document ([https://technical.wiki.d4science.research-infrastructures.eu/documentation/index.php/Administration#DefaultUserProfile More about the DefaultUserProfile]).
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[[Time Series | Click here to visit the Time Series portlet guide]]
  
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== AquaMaps Suite ==
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The AquaMaps suite supports the production of AquaMaps and related data products, i.e. compound objects containing species and biodiversity occurrence predictive maps.
  
[[Image:ProfileAdmin.png]]
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[[AquaMaps | Click here to visit the AquaMaps Suite guide]]

Latest revision as of 15:23, 8 April 2015

Workspace

A workspace represents a collaborative area in which users can exchange and organize information objects (items) according to their specific needs. Because of this, every user of any Virtual Research Environment is provided with this area. Such an area is further organized in workspaces and baskets as to resemble a classic folder-based file system. The information objects that can be managed via the workspace range from files to D4Science documents, i.e. compound objects comprising metadata, alternative representations and multiple parts. The modality a workspace is populated range from the dragging of D4Science documents (or part of them) to the upload of files from its desktop and the exchange of workspace objects among users.

Click here for more information

Login to VO/VRE

See Log in User Guide.

Search

See Search User Guide.

Annotations

Annotations’ management is performed by the Annotation Portlet. This is a graphical user interface which provides an easy and sufficient way to annotate gCube information objects. Annotation Portlet can be invoked by selecting the “Manage Annotations” action among the actions associated with any item displayed in the Results portlet.

Then the user is moved to the annotation portlet where s/he is able to see the title, the mimetype, the content of the selected object as well as its annotations sorted by their creation date and grouped into threads.

Depending on the mimetype of the annotated object, the visualization of its content may differ.

In most cases, the content is displayed in a specified part of the portlet.

For a zip file, its entries are displayed and the user is able to download any of them.

Tiff images are transformed into a displayable format (png); video files are available only for download and the visualization of pdf files depends on the behavior of the browser (normally a plug-in is required).

On the other hand, the annotations are grouped into threads, shown up as a list where the title of each thread is the title of the first contained annotation. The user can enter each thread and the annotations of this thread are displayed as a list where the title, their creation/ modification date and the author’s name are posted up. The user is able to select which annotations (comments or associations) s/he wants to see just by clicking on it. The content of the annotations is shown at a pop up window where you can edit it. In the case of associations, the title of the associated object as well as a link to its content is displayed.

The user can either enter a selected Thread or create a new Thread by clicking on the corresponding buttons. By creating a new Thread a new annotation is actually created. After entering a Thread the uses can add an annotation by clicking on the “Add” button and afterwards by filling in the title and text field, in the case of text annotations, or by filling in the title field and selecting an object existing in the basket as an associated object in the case of associations. S/he may also delete or edit an annotation.

All the changes made by the user are persisted when s/he presses the "Save Changes" button.


Annotation Portlet



When the object that is annotated is an image the user is able to add an annotation to a specific part of the image file. The user selects a space fragment and then he fills in the title and text fields. Then the space fragments are shown on the image and by clicking on one of them the content of the annotation is displayed.


New annotation with fragment

The user can edit an annotation be selecting the annotation s/he wants to edit and click on the "Edit" button. A pop up window appears with the content of the annotation

New annotation with fragment



Content Viewer

The content viewer portlet provides the functionality to view a gCube object and all its properties and transform it, if any transformation is available for the object's mime type.

Using this portlet you can:

  • View the content of the selected object
  • View the available metadata of the object
  • View the aternative representations
  • Transform the main object using any of the available transformation programs (if any) and save the result of the transformation as a new object

In order to use this portlet you should select from the results menu the Explore Object option for the object you would like to explore. After selecting this option you will be redirected to the Content Viewer portlet.
The main object is displayed as you can see at the image below

CVMain.png

When you click on the Display button the pop-up window with the all the available properties for this object is displayed. You can select any of the available properties to view. For example you can see at the image below the metadata at the FARM_dc schema for this object.

CMDisMetadata.png

To view any of the alternative objects that are related to this object click on them

CVDisAlt.png

Transforming the selected object

Depending on the available transformations programs you can transform the object to a new object and save it. In the example below the main object can be transformed to a new image with given height and width.

CVTransformMain.png


Search Profile Settings

The Search Profile portlet can be accessed by all users that have a portal account. Each user has his/her own search profile and he/she can view and/or edit its content through this portlet. By editing the search profile's contents you have several options that affect the search results or the presentation of the results and their metadata.


  • Personalize the presentation of the results and their metadata:
    • For each available collection you can select any of the available presentable fields that will be used for the presentation of the results from the results portlet when this collection is used in search. If you don't select any field then all the available presentable fields will be displayed.
    • For each available metadata schema you can select one of the available xslts that will be used for the presentation of the metadata. If you don't change anything the default XSLT will be used.
    • A preview is displayed for the current selected schema and XSLT. This helps you to select the desired XSLT.

In order to apply the changes you need to click on the Save profile button. A message is displayed to inform you if the profile was successfully updated.

Report Management

See Report Management page.

Time Series

Click here to visit the Time Series portlet guide

AquaMaps Suite

The AquaMaps suite supports the production of AquaMaps and related data products, i.e. compound objects containing species and biodiversity occurrence predictive maps.

Click here to visit the AquaMaps Suite guide